Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs9474463 chr6:53109956 A/C 1.69E-5 508 22.47 22.87 14.8 KM Plot
LGG rs9474464 chr6:53109958 A/G 1.69E-5 508 22.47 22.87 14.8 KM Plot
LGG rs9474465 chr6:53111504 T/C 1.85E-5 509 22.47 23.5 14.8 KM Plot
LGG rs9474466 chr6:53111517 A/G 1.85E-5 509 22.47 23.5 14.8 KM Plot
LGG rs948125 chr11:126800511 C/G 9.39E-5 509 22.58 24.03 4.73 KM Plot
LGG rs9671445 chr14:24415230 A/G 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs9671467 chr14:24415578 A/G 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs9671588 chr14:24415589 T/G 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs9671870 chr14:24415009 G/A 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs9671883 chr14:24415317 G/T 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs9805882 chr14:24417420 G/A 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs9805889 chr14:24417399 C/G 4.01E-5 509 15.53 20.98 23.72 KM Plot
LGG rs9805913 chr14:24418347 C/T 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs9806029 chr14:24417546 A/G 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs9925393 chr16:67780829 C/T 4.57E-12 508 21.6 31.05 6.47 KM Plot